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Description

calreticulin [Source:HGNC Symbol;Acc:1455]

Gene Synonyms

CRT, CRTC, FLJ26680, HEL-S-99n, RO, SSA, cC1qR

Location
About this transcript

This transcript has 9 exons, is annotated with 25 domains and features, is associated with 2630 variant alleles and maps to 574 oligo probes.

Gene
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
CALR-001ENST00000316448.51903417aaENSP00000320866.4
 
Protein coding
CCDS12288B4E2Y9 P27797 NM_004343
NP_004334
GENCODE basic
CALR-006ENST00000586760.1913163aaENSP00000465918.1
 
Protein coding
---CDS 5' incomplete
CALR-008ENST00000588454.1776247aaENSP00000465105.1
 
Protein coding
-K7EJB9 -CDS 3' incomplete
CALR-007ENST00000586967.139413aaENSP00000466037.1
 
Nonsense mediated decay
---CDS 5' incomplete
CALR-003ENST00000587486.2957No protein-
 
Retained intron
----
CALR-004ENST00000590325.1781No protein-
 
Retained intron
----
CALR-005ENST00000586803.1667No protein-
 
Retained intron
----
Statistics

Exons: 9, Coding exons: 9, Transcript length: 1,903 bps, Translation length: 417 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS12288

Uniprot

This transcript corresponds to the following Uniprot identifiers: P27797

Version

ENST00000316448.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:
OTTHUMT00000451952 (version 1)
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays