Transcript: ENST00000319380.7 UBE2O-001

Description

ubiquitin-conjugating enzyme E2O [Source:HGNC Symbol;Acc:29554]

Gene Synonyms

E2-230K, KIAA1734

Location

Chromosome 17: 74,385,532-74,449,288 reverse strand.

About this transcript

This transcript has 18 exons, is annotated with 20 domains and features, is associated with 29623 variant alleles and maps to 600 oligo probes.

Gene

This transcript is a product of gene ENSG00000175931.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000319380.7	UBE2O-001	5436	1292aa	ENSP00000323687.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32742	Q9C0C9	NM_022066.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000587127.1	UBE2O-003	3569	807aa	ENSP00000468498.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000590658.1	UBE2O-005	567	189aa	ENSP00000467623.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000587581.1	UBE2O-006	545	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000586409.1	UBE2O-002	3579	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000586505.1	UBE2O-004	522	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 18, Coding exons: 18, Transcript length: 5,436 bps, Translation length: 1,292 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9C0C9

CCDS

This transcript is a member of the Human CCDS set: CCDS32742

Version

ENST00000319380.7

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000450123 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000319380.7 UBE2O-001

Summary