Transcript: ENST00000311764.2 ZNF408-001

Description

zinc finger protein 408 [Source:HGNC Symbol;Acc:20041]

Gene Synonyms

FLJ12827, PFM14, PRDM17

Location

About this transcript

This transcript has 5 exons, is annotated with 62 domains and features, is associated with 3106 variant alleles and maps to 321 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000311764.2	ZNF408-001	2442	720aa	ENSP00000309606.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7923	Q9H9D4	NM_024741.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000527008.1	ZNF408-005	699	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000531866.1	ZNF408-002	575	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000526410.1	ZNF408-003	539	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000534481.1	ZNF408-004	529	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 2,442 bps, Translation length: 720 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9H9D4

CCDS

This transcript is a member of the Human CCDS set: CCDS7923

Version

ENST00000311764.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000390485 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.