Transcript: ENST00000548169.2 ATP2A2-006

Description

ATPase, Ca++ transporting, cardiac muscle, slow twitch 2 [Source:HGNC Symbol;Acc:812]

Gene Synonyms

ATP2B, DAR, DD, SERCA2

Location

Chromosome 12: 110,729,854-110,784,426 forward strand.

About this transcript

This transcript has 16 exons, is annotated with 40 domains and features, is associated with 25487 variant alleles and maps to 342 oligo probes.

Gene

This transcript is a product of gene ENSG00000174437.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000395494.2	ATP2A2-201	8229	1015aa	ENSP00000378872.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		P16615	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000308664.6	ATP2A2-001	4453	997aa	ENSP00000311186.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9143	P16615	NM_170665.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000539276.2	ATP2A2-003	4094	1042aa	ENSP00000440045.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9144	P16615	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000548169.2	ATP2A2-006	2951	933aa	ENSP00000449454.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000552636.1	ATP2A2-004	529	44aa	ENSP00000447406.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8W1Z7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000553144.1	ATP2A2-012	264	46aa	ENSP00000450407.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		P16615	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000377685.5	ATP2A2-002	5702	50aa	ENSP00000366913.4	Nonsense mediated decay		J3QSY6	-	-
ENST00000550248.2	ATP2A2-005	544	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000549840.1	ATP2A2-007	503	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000313432.5	ATP2A2-011	5575	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000550262.1	ATP2A2-009	3670	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000547050.1	ATP2A2-008	1176	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000547792.1	ATP2A2-010	541	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 16, Coding exons: 16, Transcript length: 2,951 bps, Translation length: 933 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000548169.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000413716 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000548169.2 ATP2A2-006

Summary