Transcript: ENST00000348795.4 SNCG-001

Description

synuclein, gamma (breast cancer-specific protein 1) [Source:HGNC Symbol;Acc:11141]

Gene Synonyms

BCSG1, PERSYN, PRSN, SR, persyn

Location

Chromosome 10: 88,718,387-88,722,922 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 9 domains and features, is associated with 2256 variant alleles and maps to 300 oligo probes.

Gene

This transcript is a product of gene ENSG00000173267.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000372017.3	SNCG-002	701	127aa	ENSP00000361087.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7380	O76070 Q6FHG5	NM_003087.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000348795.4	SNCG-001	684	126aa	ENSP00000344658.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8W754	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000483064.1	SNCG-003	794	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000465679.1	SNCG-004	641	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 684 bps, Translation length: 126 residues

Version

ENST00000348795.4

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Stop codons

This transcript has a variant, rs9864, that causes a stop codon to be lost in at least 10% of HapMap or 1000 Genome population(s) ESP6500:European_American, CSHL-HAPMAP:HapMap-CEU, ESP6500:African_American.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000049166 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000348795.4 SNCG-001

Summary