Transcript: ENST00000310260.3 VANGL1-003

Description

VANGL planar cell polarity protein 1 [Source:HGNC Symbol;Acc:15512]

Gene Synonyms

KITENIN, LPP2, STB2, STBM2

Location

About this transcript

This transcript has 8 exons, is annotated with 12 domains and features, is associated with 21566 variant alleles and maps to 325 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000355485.2	VANGL1-201	8691	524aa	ENSP00000347672.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS883	Q8TAA9	NM_138959.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000369510.4	VANGL1-001	8647	522aa	ENSP00000358523.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53350	Q8TAA9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000310260.3	VANGL1-003	2265	524aa	ENSP00000310800.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS883	Q8TAA9	NM_001172412.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000369509.1	VANGL1-002	2062	524aa	ENSP00000358522.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS883	Q8TAA9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000474344.1	VANGL1-005	461	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000478369.1	VANGL1-004	363	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 8, Coding exons: 7, Transcript length: 2,265 bps, Translation length: 524 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8TAA9

CCDS

This transcript is a member of the Human CCDS set: CCDS883

Version

ENST00000310260.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000033096 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.