Transcript: ENST00000307808.6 AFF1-001

Description

AF4/FMR2 family, member 1 [Source:HGNC Symbol;Acc:7135]

Gene Synonyms

AF-4, AF4, FEL, MLLT2, PBM1

Location

Chromosome 4: 87,928,140-88,062,190 forward strand.

About this transcript

This transcript has 20 exons, is annotated with 17 domains and features, is associated with 63660 variant alleles and maps to 950 oligo probes.

Gene

This transcript is a product of gene ENSG00000172493.16 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000307808.6	AFF1-001	9390	1210aa	ENSP00000305689.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3616	D6RAU0 D6RIZ5 P51825 Q14C88 Q712L1	NM_005935.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000395146.4	AFF1-201	9285	1218aa	ENSP00000378578.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54775	D6RAU0 D6RIZ5 F5GXF9 P51825 Q712L1	NM_001166693.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000544085.1	AFF1-202	3164	849aa	ENSP00000440843.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RAU0 F5GXF9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000507468.1	AFF1-007	1486	406aa	ENSP00000427593.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RIZ5 E7ETI4 Q05D98	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000503477.1	AFF1-008	1478	417aa	ENSP00000424483.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DXZ8 D6RIZ5 E7EMC5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000511722.1	AFF1-003	638	137aa	ENSP00000424766.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RAU0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000514970.1	AFF1-004	582	194aa	ENSP00000424881.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RAU0 H0Y9S4	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000511442.1	AFF1-005	463	52aa	ENSP00000425755.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RIZ5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000511996.1	AFF1-009	480	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000504956.1	AFF1-002	1668	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000503369.1	AFF1-006	598	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 20, Coding exons: 20, Transcript length: 9,390 bps, Translation length: 1,210 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P51825

CCDS

This transcript is a member of the Human CCDS set: CCDS3616

Version

ENST00000307808.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000253053 (version 3)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Recent locations

Transcript: ENST00000307808.6 AFF1-001

Summary