Transcript: ENST00000476163.1 CAMTA1-002

Description

calmodulin binding transcription activator 1 [Source:HGNC Symbol;Acc:18806]

Gene Synonyms

CANPMR, KIAA0833

Location

Chromosome 1: 6,845,524-6,948,261 forward strand.

About this transcript

This transcript has 4 exons, is associated with 44234 variant alleles and maps to 343 oligo probes.

Gene

This transcript is a product of gene ENSG00000171735.14 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000303635.7	CAMTA1-001	8444	1673aa	ENSP00000306522.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS30576	Q9Y6Y1	NM_015215.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000439411.2	CAMTA1-201	4980	1659aa	ENSP00000402561.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9Y6Y1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000495233.1	CAMTA1-014	3247	637aa	ENSP00000451720.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q7Z7P1	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000490905.1	CAMTA1-013	2053	239aa	ENSP00000452024.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000476864.1	CAMTA1-015	714	237aa	ENSP00000452319.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9Y6Y1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000473578.1	CAMTA1-010	567	80aa	ENSP00000451388.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55574	H0YJV1 Q9Y6Y1	NM_001195563.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000467404.2	CAMTA1-003	546	92aa	ENSP00000450530.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V297	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000557126.1	CAMTA1-016	486	101aa	ENSP00000451510.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55575	Q9Y6Y1	NM_001242701.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000482934.1	CAMTA1-012	743	39aa	ENSP00000451443.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000461311.1	CAMTA1-005	431	73aa	ENSP00000452184.1	Nonsense mediated decay		H0YJV1	-	-
ENST00000486138.1	CAMTA1-004	392	44aa	ENSP00000452505.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000476163.1	CAMTA1-002	863	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000461580.1	CAMTA1-007	826	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000470648.1	CAMTA1-006	766	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000467267.1	CAMTA1-011	664	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000490738.1	CAMTA1-009	538	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000472283.1	CAMTA1-008	384	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 863 bps,

Version

ENST00000476163.1

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000003589 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000476163.1 CAMTA1-002

Summary