Transcript: ENST00000361311.4 CLSTN1-002

Description

calsyntenin 1 [Source:HGNC Symbol;Acc:17447]

Gene Synonyms

ALC-ALPHA, CDHR12, CS1, CSTN1, KIAA0911, PIK3CD, XB31alpha, alcalpha1, alcalpha2

Location

Chromosome 1: 9,789,086-9,884,042 reverse strand.

About this transcript

This transcript has 18 exons, is annotated with 27 domains and features, is associated with 46484 variant alleles and maps to 650 oligo probes.

Gene

This transcript is a product of gene ENSG00000171603.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000377298.4	CLSTN1-001	5221	981aa	ENSP00000366513.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS30580	O94985	NM_001009566.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000377288.3	CLSTN1-201	5162	962aa	ENSP00000366502.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4E3Q1 Q5SR54	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000361311.4	CLSTN1-002	4647	971aa	ENSP00000354997.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS105	O94985	NM_014944.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000435891.1	CLSTN1-003	3829	782aa	ENSP00000401934.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5SR54	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000477264.1	CLSTN1-006	2169	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000464286.1	CLSTN1-005	563	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 18, Coding exons: 18, Transcript length: 4,647 bps, Translation length: 971 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O94985

CCDS

This transcript is a member of the Human CCDS set: CCDS105

Version

ENST00000361311.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000004240 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000361311.4 CLSTN1-002

Summary