Transcript: ENST00000372389.3 POLR1C-008

Description

polymerase (RNA) I polypeptide C, 30kDa [Source:HGNC Symbol;Acc:20194]

Gene Synonyms

POLR1E, RPA39, RPA40, RPA5, RPAC1, TCS3

Location

Chromosome 6: 43,484,760-43,489,264 forward strand.

About this transcript

This transcript has 9 exons, is annotated with 12 domains and features, is associated with 2511 variant alleles and maps to 460 oligo probes.

Gene

This transcript is a product of gene ENSG00000171453.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000372389.3	POLR1C-008	1355	346aa	ENSP00000361465.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4901	D6RDJ3 O15160 Q96HT3	NM_203290.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000304004.3	POLR1C-006	1280	342aa	ENSP00000307212.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RDJ3 O15160	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000372344.2	POLR1C-005	1119	296aa	ENSP00000361419.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RDJ3 E7EQB9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000428025.2	POLR1C-009	576	124aa	ENSP00000395401.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RDJ3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000423780.1	POLR1C-007	418	140aa	ENSP00000409536.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000455605.2	POLR1C-010	1882	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000481352.2	POLR1C-004	1725	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000488601.2	POLR1C-001	973	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000512472.1	POLR1C-002	569	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 1,355 bps, Translation length: 346 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O15160

CCDS

This transcript is a member of the Human CCDS set: CCDS4901

Version

ENST00000372389.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000040652 (version 3)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000372389.3 POLR1C-008

Summary