Transcript: ENST00000399380.3 CDH2-003

Description

cadherin 2, type 1, N-cadherin (neuronal) [Source:HGNC Symbol;Acc:1759]

Gene Synonyms

CD325, CDHN, CDw325, NCAD

Location

Chromosome 18: 25,531,045-25,616,549 reverse strand.

About this transcript

This transcript has 15 exons, is annotated with 52 domains and features, is associated with 37689 variant alleles and maps to 643 oligo probes.

Gene

This transcript is a product of gene ENSG00000170558.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000269141.3	CDH2-001	4332	906aa	ENSP00000269141.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11891	C9J126 C9JMH2 P19022	NM_001792.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000399380.3	CDH2-003	3737	875aa	ENSP00000382312.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A8MWK3 C9J126 C9JMH2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000418492.1	CDH2-002	740	191aa	ENSP00000411360.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J126 C9J8J8 C9JMH2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000430882.1	CDH2-005	610	120aa	ENSP00000412120.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J126 C9JMH2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000413878.1	CDH2-004	563	73aa	ENSP00000414269.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JMH2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 15, Coding exons: 15, Transcript length: 3,737 bps, Translation length: 875 residues

Version

ENST00000399380.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Stop codons

This transcript has a variant, rs1944294, that causes a stop codon to be gained in at least 10% of HapMap or 1000 Genome population(s) CSHL-HAPMAP:HapMap-CEU, CSHL-HAPMAP:HAPMAP-GIH, CSHL-HAPMAP:HapMap-HCB, CSHL-HAPMAP:HAPMAP-MEX, CSHL-HAPMAP:HAPMAP-CHB, CSHL-HAPMAP:HAPMAP-MKK, ESP6500:African_American, CSHL-HAPMAP:HAPMAP-CHD, CSHL-HAPMAP:HAPMAP-TSI, ESP6500:European_American, CSHL-HAPMAP:HapMap-JPT.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000139363 (version 3)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000399380.3 CDH2-003

Summary