Transcript: ENST00000549295.1 KRT4-004

Description

keratin 4 [Source:HGNC Symbol;Acc:6441]

Gene Synonyms

CK-4, CK4, CYK4, K4

Location

Chromosome 12: 53,202,859-53,204,711 reverse strand.

About this transcript

This transcript has 2 exons, is associated with 885 variant alleles and maps to 107 oligo probes.

Gene

This transcript is a product of gene ENSG00000170477.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000551956.1	KRT4-001	2576	520aa	ENSP00000448220.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41787	P19013 Q9UEK9	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000293774.4	KRT4-201	2576	594aa	ENSP00000293774.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		P19013 Q9UEK9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000458244.2	KRT4-202	2023	500aa	ENSP00000387904.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H8K9 Q9UEK9	NM_002272.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000548097.1	KRT4-002	1839	78aa	ENSP00000449755.1	Nonsense mediated decay		F8VX05	-	-
ENST00000552668.1	KRT4-003	558	86aa	ENSP00000447320.1	Nonsense mediated decay		F8VZR6	-	-
ENST00000549295.1	KRT4-004	576	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000551436.1	KRT4-005	552	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 576 bps,

Version

ENST00000549295.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000405933 (version 1)

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Transcript: ENST00000549295.1 KRT4-004

Summary