Transcript: ENST00000483133.1 MUC3A-002

Description

mucin 3A, cell surface associated [Source:HGNC Symbol;Acc:7513]

Gene Synonyms

MUC-3A, MUC3, MUC3A

Location

Chromosome 7: 100,550,330-100,611,118 forward strand.

About this transcript

This transcript has 10 exons, is associated with 10986 variant alleles and maps to 678 oligo probes.

Gene

This transcript is a product of gene ENSG00000169894.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	RefSeq	Flags
ENST00000319509.7	MUC3A-001	3338	876aa	ENSP00000324834.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H9XFA8 I0CMK2 J3QST7	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000422757.1	MUC3A-004	1073	308aa	ENSP00000406404.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H0Y6M1	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000414964.1	MUC3A-003	1131	106aa	ENSP00000393306.1	Nonsense mediated decay	Q02505 Q7LDU4	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000483366.1	MUC3A-006	1075	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-	-
ENST00000483133.1	MUC3A-002	4238	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-
ENST00000480291.1	MUC3A-005	1144	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-

Summary

Statistics

Exons: 10, Coding exons: 0, Transcript length: 4,238 bps,

Version

ENST00000483133.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000347216 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000483133.1 MUC3A-002

Summary