Transcript: ENST00000392518.4 CPT1C-008

Description

carnitine palmitoyltransferase 1C [Source:HGNC Symbol;Acc:18540]

Gene Synonyms

CATL1, CPT1-B, CPT1P, CPTI-B, CPTIC, FLJ23809

Location

Chromosome 19: 50,194,373-50,216,988 forward strand.

About this transcript

This transcript has 20 exons, is annotated with 11 domains and features, is associated with 12971 variant alleles and maps to 564 oligo probes.

Gene

This transcript is a product of gene ENSG00000169169.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000392518.4	CPT1C-008	2910	803aa	ENSP00000376303.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12779	B3KU49 M0QZ13 M0R115 M0R2V3 Q8TCG5	NM_001199752.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000405931.2	CPT1C-006	2785	792aa	ENSP00000384465.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46147	M0QZ13 M0R115 M0R2V3 Q8TCG5	NM_001136052.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000323446.5	CPT1C-001	2783	803aa	ENSP00000319343.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12779	B3KU49 M0QZ13 M0R115 M0R2V3 Q8TCG5	NM_152359.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000598293.1	CPT1C-009	2767	803aa	ENSP00000473028.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12779	B3KU49 M0QZ13 M0R115 M0R2V3 Q8TCG5	NM_001199753.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000354199.5	CPT1C-201	2500	714aa	ENSP00000346138.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0QZ13 M0R115 M0R2H6 M0R2V3 Q8TCG5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000595031.1	CPT1C-005	1137	336aa	ENSP00000472579.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0R2H6	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000598396.1	CPT1C-017	1059	257aa	ENSP00000470221.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0QZ13 M0R115 M0R2V3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000594587.1	CPT1C-018	754	177aa	ENSP00000471579.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0R115 M0R2V3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000602019.1	CPT1C-019	599	95aa	ENSP00000472828.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0R2V3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000595969.1	CPT1C-016	586	130aa	ENSP00000472453.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0R2B9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000597099.1	CPT1C-020	310	81aa	ENSP00000471841.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0R1F9	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000598259.1	CPT1C-007	2679	68aa	ENSP00000472742.1	Nonsense mediated decay		M0R0D3	-	-
ENST00000595568.1	CPT1C-012	830	72aa	ENSP00000473082.1	Nonsense mediated decay		M0R399	-	-
ENST00000596922.1	CPT1C-015	620	68aa	ENSP00000470739.1	Nonsense mediated decay		M0R0D3	-	-
ENST00000594038.1	CPT1C-013	503	68aa	ENSP00000471160.1	Nonsense mediated decay		M0R0D3	-	-
ENST00000598714.1	CPT1C-014	528	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000596701.1	CPT1C-002	2950	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000599023.1	CPT1C-004	2518	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000295404.5	CPT1C-003	1952	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000600944.1	CPT1C-011	1027	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000595901.1	CPT1C-010	812	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000599937.1	CPT1C-022	700	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000598647.1	CPT1C-023	681	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000598072.1	CPT1C-021	651	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000594431.1	CPT1C-024	558	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 20, Coding exons: 18, Transcript length: 2,910 bps, Translation length: 803 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8TCG5

CCDS

This transcript is a member of the Human CCDS set: CCDS12779

Version

ENST00000392518.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000465873 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000392518.4 CPT1C-008

Summary