Transcript: ENST00000306317.2 LGI3-001

Description

leucine-rich repeat LGI family, member 3 [Source:HGNC Symbol;Acc:18711]

Gene Synonyms

LGIL4

Location

About this transcript

This transcript has 8 exons, is annotated with 32 domains and features, is associated with 5327 variant alleles and maps to 364 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000306317.2	LGI3-001	3272	548aa	ENSP00000302297.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6025	Q8N145	NM_139278.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000424267.2	LGI3-002	3114	524aa	ENSP00000399121.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A5PLP2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000517694.1	LGI3-004	663	221aa	ENSP00000427817.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YAP4	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000518365.1	LGI3-005	784	134aa	ENSP00000430653.1	Nonsense mediated decay		E5RIV5	-	-
ENST00000520124.1	LGI3-003	4420	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 3,272 bps, Translation length: 548 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8N145

CCDS

This transcript is a member of the Human CCDS set: CCDS6025

Version

ENST00000306317.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000254482 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.