Transcript: ENST00000302328.3 SCN11A-001

Description

sodium channel, voltage-gated, type XI, alpha subunit [Source:HGNC Symbol;Acc:10583]

Gene Synonyms

FEPS3, HSAN7, NAV1.9, NaN, Nav1.9, PN5, SCN12A, SNS-2, SNS2

Location

About this transcript

This transcript has 26 exons, is annotated with 50 domains and features, is associated with 44983 variant alleles and maps to 814 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000302328.3	SCN11A-001	6500	1791aa	ENSP00000307599.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33737	Q9UI33	NM_014139.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000450244.1	SCN11A-201	6500	1791aa	ENSP00000400945.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9UI33	NM_001287223.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000444237.2	SCN11A-002	5729	1444aa	ENSP00000408028.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9UI33	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000456224.3	SCN11A-003	5262	1753aa	ENSP00000416757.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9UI33	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,

Summary

Statistics

Exons: 26, Coding exons: 26, Transcript length: 6,500 bps, Translation length: 1,791 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9UI33

CCDS

This transcript is a member of the Human CCDS set: CCDS33737

Version

ENST00000302328.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000109746 (version 4)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.