Transcript: ENST00000343516.6 CASKIN1-001

Description

CASK interacting protein 1 [Source:HGNC Symbol;Acc:20879]

Gene Synonyms

ANKS5A, KIAA1306

Location

About this transcript

This transcript has 20 exons, is annotated with 51 domains and features, is associated with 12365 variant alleles and maps to 677 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000343516.6	CASKIN1-001	5756	1431aa	ENSP00000345436.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42103	D3DU87 Q8WXD9	NM_020764.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000564289.1	CASKIN1-004	193	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000562055.1	CASKIN1-003	435	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 20, Coding exons: 20, Transcript length: 5,756 bps, Translation length: 1,431 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8WXD9

CCDS

This transcript is a member of the Human CCDS set: CCDS42103

Version

ENST00000343516.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000435055 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.