Transcript: ENST00000574584.1 GGT6-006

Description

gamma-glutamyltransferase 6 [Source:HGNC Symbol;Acc:26891]

Gene Synonyms

FLJ90165

Location

Chromosome 17: 4,461,662-4,463,859 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 8 domains and features, is associated with 1458 variant alleles and maps to 166 oligo probes.

Gene

This transcript is a product of gene ENSG00000167741.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000574154.1	GGT6-003	2482	493aa	ENSP00000458307.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45582	B4DPG6 Q6P531	NM_001288702.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000301395.3	GGT6-001	2534	461aa	ENSP00000301395.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11047	B4DPG6 Q6P531	NM_153338.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000381550.3	GGT6-002	2145	499aa	ENSP00000370962.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DPG6 J3KPJ0	NM_001122890.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000573591.1	GGT6-004	1730	345aa	ENSP00000461230.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DPG6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000574584.1	GGT6-006	583	180aa	ENSP00000459662.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L2G6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000575573.1	GGT6-005	556	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 583 bps, Translation length: 180 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000574584.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Stop codons

This transcript has a variant, rs7215121, that causes a stop codon to be gained in at least 10% of HapMap or 1000 Genome population(s) ESP6500:African_American, ESP6500:European_American.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000439125 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000574584.1 GGT6-006

Summary