Transcript: ENST00000578922.1 SMG8-002

Description

SMG8 nonsense mediated mRNA decay factor [Source:HGNC Symbol;Acc:25551]

Gene Synonyms

ABC2, C17orf71, FLJ10587, FLJ23205

Location

About this transcript

This transcript has 1 exon, is annotated with 7 domains and features, is associated with 1212 variant alleles and maps to 81 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000543872.2	SMG8-001	3477	991aa	ENSP00000438748.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11615	Q8ND04	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000300917.5	SMG8-201	3263	991aa	ENSP00000300917.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11615	Q8ND04	NM_018149.6	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000578922.1	SMG8-002	2178	588aa	ENSP00000462119.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q8ND04	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000582469.1	SMG8-003	1144	271aa	ENSP00000462931.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KTD7	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000580798.1	SMG8-004	583	32aa	ENSP00000463175.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000580498.1	SMG8-005	785	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 1, Coding exons: 1, Transcript length: 2,178 bps, Translation length: 588 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8ND04

Version

ENST00000578922.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000446019 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.