Transcript: ENST00000577238.1 COG1-007

Description

component of oligomeric golgi complex 1 [Source:HGNC Symbol;Acc:6545]

Gene Synonyms

CDG2G, KIAA1381, LDLB

Location

Chromosome 17: 71,202,077-71,203,228 forward strand.

About this transcript

This transcript has 2 exons, is associated with 653 variant alleles and maps to 144 oligo probes.

Gene

This transcript is a product of gene ENSG00000166685.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000438720.3	COG1-002	4051	962aa	ENSP00000400111.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KSY3	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000299886.4	COG1-001	3079	980aa	ENSP00000299886.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11692	J3KSY3 Q8WTW3	NM_018714.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000582672.1	COG1-011	520	102aa	ENSP00000463298.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KSY3	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000582512.1	COG1-010	506	126aa	ENSP00000463696.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KSY3	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000582587.2	COG1-005	739	124aa	ENSP00000462101.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000582973.1	COG1-009	438	26aa	ENSP00000462709.1	Nonsense mediated decay		J3KSY3	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000577238.1	COG1-007	707	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000580271.1	COG1-008	601	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000577844.1	COG1-006	580	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 707 bps,

Version

ENST00000577238.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000441699 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000577238.1 COG1-007

Summary