Transcript: ENST00000299440.5 RAG1-002

Description

recombination activating gene 1 [Source:HGNC Symbol;Acc:9831]

Gene Synonyms

MGC43321, RAG-1, RNF74

Location

About this transcript

This transcript has 2 exons, is annotated with 16 domains and features, is associated with 5873 variant alleles and maps to 257 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000299440.5	RAG1-002	6564	1043aa	ENSP00000299440.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7902	P15918	NM_000448.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000534663.1	RAG1-001	3707	931aa	ENSP00000434610.1	Nonsense mediated decay		E9PPC4	-	-
ENST00000529126.1	RAG1-003	482	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 1, Transcript length: 6,564 bps, Translation length: 1,043 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P15918

CCDS

This transcript is a member of the Human CCDS set: CCDS7902

Version

ENST00000299440.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000389535 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.