Transcript: ENST00000342245.4 SMPD1-001

Description

sphingomyelin phosphodiesterase 1, acid lysosomal [Source:HGNC Symbol;Acc:11120]

Gene Synonyms

ASM, ASMASE, NPD

Location

Chromosome 11: 6,411,661-6,416,225 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 13 domains and features, is associated with 3502 variant alleles and maps to 494 oligo probes.

Gene

This transcript is a product of gene ENSG00000166311.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000342245.4	SMPD1-001	2452	631aa	ENSP00000340409.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44531	E9PL59 P17405	NM_001007593.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000299397.3	SMPD1-201	2326	587aa	ENSP00000299397.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PL59 G3XAB5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000356761.2	SMPD1-202	2290	575aa	ENSP00000349203.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7EWE2 E9PL59	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000527275.1	SMPD1-008	2188	630aa	ENSP00000435350.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31409	E9PL59 P17405	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000526280.1	SMPD1-004	1344	317aa	ENSP00000436278.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PL59	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000530395.1	SMPD1-009	447	52aa	ENSP00000431479.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PL59	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000534405.1	SMPD1-007	2446	402aa	ENSP00000434353.1	Nonsense mediated decay		E9LUE9 E9PL59 E9PQT3	-	-
ENST00000533123.1	SMPD1-002	2211	366aa	ENSP00000435950.1	Nonsense mediated decay		E9PL59 G3V1E1 Q8IUN0	-	-
ENST00000531303.1	SMPD1-003	1451	171aa	ENSP00000432625.1	Nonsense mediated decay		E9PPK6	-	-
ENST00000533196.1	SMPD1-010	425	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000531336.1	SMPD1-006	650	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000532367.1	SMPD1-005	409	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 2,452 bps, Translation length: 631 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P17405

CCDS

This transcript is a member of the Human CCDS set: CCDS44531

Version

ENST00000342245.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000384205 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000342245.4 SMPD1-001

Summary