Transcript: ENST00000361271.3 PTPLA-001

Description

protein tyrosine phosphatase-like (proline instead of catalytic arginine), member A [Source:HGNC Symbol;Acc:9639]

Gene Synonyms

CAP, HACD1

Location

Chromosome 10: 17,631,958-17,659,376 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 8 domains and features, is associated with 13413 variant alleles and maps to 295 oligo probes.

Gene

This transcript is a product of gene ENSG00000165996.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000361271.3	PTPLA-001	1310	288aa	ENSP00000355308.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7121	B0YJ81 J3KT94	NM_014241.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000326961.6	PTPLA-002	773	158aa	ENSP00000322923.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A6NP58 B0YJ83	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000466335.1	PTPLA-003	717	174aa	ENSP00000462336.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KT94	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000498812.1	PTPLA-004	459	37aa	ENSP00000462868.1	Nonsense mediated decay		J3KT94	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000471481.1	PTPLA-005	566	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 1,310 bps, Translation length: 288 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: B0YJ81

CCDS

This transcript is a member of the Human CCDS set: CCDS7121

Version

ENST00000361271.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000047046 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000361271.3 PTPLA-001

Summary