Transcript: ENST00000433618.4 PNLIPRP2-005

Description

pancreatic lipase-related protein 2 [Source:HGNC Symbol;Acc:9157]

Gene Synonyms

PLRP2

Location

Chromosome 10: 118,380,818-118,404,608 forward strand.

About this transcript

This transcript has 12 exons, is associated with 12047 variant alleles and maps to 372 oligo probes.

Gene

This transcript is a product of gene ENSG00000165862.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	RefSeq	Flags
ENST00000537242.1	PNLIPRP2-201	1479	468aa	ENSP00000446346.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F5H1V6	NM_005396.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000433618.4	PNLIPRP2-005	1409	469aa	ENSP00000424858.3	Pseudogene owing to a SNP/indel but in other individuals/haplotypes/strains the gene is translated.Polymorphic pseudogene	-	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000298771.7	PNLIPRP2-004	1481	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-	-
ENST00000429325.1	PNLIPRP2-001	578	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-	-
ENST00000444825.2	PNLIPRP2-002	578	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-

Summary

Statistics

Exons: 12, Coding exons: 12, Transcript length: 1,409 bps, Translation length: 469 residues

Version

ENST00000433618.4

Type

Polymorphic pseudogene

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Stop codons

This transcript has a variant, rs11544712, that causes a stop codon to be lost in at least 10% of HapMap or 1000 Genome population(s) ESP6500:European_American, ESP6500:African_American.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000361357 (version 3)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000433618.4 PNLIPRP2-005

Summary