Transcript: ENST00000336803.1 CLDN2-001

Description

claudin 2 [Source:HGNC Symbol;Acc:2041]

Location

About this transcript

This transcript has 2 exons, is annotated with 18 domains and features, is associated with 3088 variant alleles and maps to 352 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000541806.1	CLDN2-202	3150	230aa	ENSP00000441283.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14524	P57739	NM_001171092.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000336803.1	CLDN2-001	2959	230aa	ENSP00000336571.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14524	P57739	NM_020384.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000540876.1	CLDN2-201	2919	230aa	ENSP00000443230.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14524	P57739	NM_001171095.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,

Summary

Statistics

Exons: 2, Coding exons: 1, Transcript length: 2,959 bps, Translation length: 230 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P57739

CCDS

This transcript is a member of the Human CCDS set: CCDS14524

Version

ENST00000336803.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000057815 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.