Transcript: ENST00000358901.6 VCP-001

Description

valosin containing protein [Source:HGNC Symbol;Acc:12666]

Gene Synonyms

ALS14, HEL-220, HEL-S-70, IBMPFD, IBMPFD1, TERA, p97

Location

Chromosome 9: 35,056,061-35,073,246 reverse strand.

About this transcript

This transcript has 17 exons, is annotated with 27 domains and features, is associated with 8677 variant alleles and maps to 947 oligo probes.

Gene

This transcript is a product of gene ENSG00000165280.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000358901.6	VCP-001	4370	806aa	ENSP00000351777.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6573	C9IZA5 C9JUP7 P55072 Q0IIN5 Q96IF9 Q9NTC4	NM_007126.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000448530.1	VCP-006	950	160aa	ENSP00000392088.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9IZA5 C9JUP7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000417448.1	VCP-004	722	115aa	ENSP00000399456.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JUP7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000493886.1	VCP-005	2942	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000480327.1	VCP-007	884	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000479300.1	VCP-003	559	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000466100.1	VCP-002	508	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 17, Coding exons: 17, Transcript length: 4,370 bps, Translation length: 806 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P55072

CCDS

This transcript is a member of the Human CCDS set: CCDS6573

Version

ENST00000358901.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000052290 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000358901.6 VCP-001

Summary