Transcript: ENST00000380701.3 CCDC171-001

Description

coiled-coil domain containing 171 [Source:HGNC Symbol;Acc:29828]

Gene Synonyms

C9orf93, Em:AL513423.1, FLJ39267, FLJ46740, bA536D16.1, bA778P13.1

Location

Chromosome 9: 15,553,084-15,974,037 forward strand.

About this transcript

This transcript has 26 exons, is annotated with 19 domains and features, is associated with 232685 variant alleles and maps to 936 oligo probes.

Gene

This transcript is a product of gene ENSG00000164989.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000380701.3	CCDC171-001	6512	1326aa	ENSP00000370077.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6481	Q6TFL3 Q8NCV3	NM_173550.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000297641.3	CCDC171-201	4097	1229aa	ENSP00000297641.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q6TFL3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000535968.1	CCDC171-202	4017	317aa	ENSP00000438838.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q7Z3F8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000449575.2	CCDC171-003	2628	469aa	ENSP00000409055.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000432954.1	CCDC171-008	2181	257aa	ENSP00000399526.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000486641.2	CCDC171-004	2322	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000470191.1	CCDC171-005	838	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000478913.1	CCDC171-009	764	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000498725.1	CCDC171-006	498	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000472806.1	CCDC171-007	478	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000474193.1	CCDC171-002	363	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 26, Coding exons: 25, Transcript length: 6,512 bps, Translation length: 1,326 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q6TFL3

CCDS

This transcript is a member of the Human CCDS set: CCDS6481

Version

ENST00000380701.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000051768 (version 4)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000380701.3 CCDC171-001

Summary