Transcript: ENST00000404666.2 VSNL1-003

Description

visinin-like 1 [Source:HGNC Symbol;Acc:12722]

Gene Synonyms

HLP3, HPCAL3, HUVISL1, VILIP, VILIP-1, VISL1

Location

Chromosome 2: 17,720,393-17,837,345 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 25 domains and features, is associated with 46688 variant alleles and maps to 366 oligo probes.

Gene

This transcript is a product of gene ENSG00000163032.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000406397.1	VSNL1-002	2725	191aa	ENSP00000384719.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1689	E7ER47 E9PE24 P62760 Q4ZFX3 Q53RT2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000295156.4	VSNL1-001	1892	191aa	ENSP00000295156.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1689	E7ER47 E9PE24 P62760 Q4ZFX3 Q53RT2	NM_003385.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000404666.2	VSNL1-003	1542	191aa	ENSP00000384014.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1689	E7ER47 E9PE24 P62760 Q4ZFX3 Q53RT2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000457525.1	VSNL1-004	576	118aa	ENSP00000405511.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7ER47 E9PE24 Q53RT2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000451533.1	VSNL1-005	562	104aa	ENSP00000390124.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PE24 Q53RT2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000483921.1	VSNL1-006	561	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 1,542 bps, Translation length: 191 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P62760

CCDS

This transcript is a member of the Human CCDS set: CCDS1689

Version

ENST00000404666.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000323804 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000404666.2 VSNL1-003

Summary