Transcript: ENST00000492861.1 PKDCC-002

Description

protein kinase domain containing, cytoplasmic [Source:HGNC Symbol;Acc:25123]

Gene Synonyms

SGK493, SgK493, VLK, Vlk

Location

Chromosome 2: 42,275,914-42,281,680 forward strand.

About this transcript

This transcript has 3 exons, is associated with 3045 variant alleles and maps to 249 oligo probes.

Gene

This transcript is a product of gene ENSG00000162878.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000294964.5	PKDCC-001	2502	493aa	ENSP00000294964.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33186	Q504Y2	NM_138370.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000401498.2	PKDCC-003	1550	181aa	ENSP00000385220.2	Nonsense mediated decay		F8WB71	-	-
ENST00000480099.1	PKDCC-008	787	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000490302.1	PKDCC-004	1447	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000475241.1	PKDCC-011	773	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000470578.1	PKDCC-007	765	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000475868.1	PKDCC-006	725	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000492861.1	PKDCC-002	693	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000485578.1	PKDCC-005	563	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 693 bps,

Version

ENST00000492861.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000325746 (version 2)

Favourite species

All species

Recent locations

Transcript: ENST00000492861.1 PKDCC-002

Summary