Transcript: ENST00000342310.3 LMX1A-001

Description

LIM homeobox transcription factor 1, alpha [Source:HGNC Symbol;Acc:6653]

Gene Synonyms

LMX1, LMX1.1

Location

About this transcript

This transcript has 9 exons, is annotated with 23 domains and features, is associated with 63828 variant alleles and maps to 379 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000342310.3	LMX1A-001	3545	382aa	ENSP00000340226.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1247	Q6NZ39 Q8TE12	NM_177398.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000294816.2	LMX1A-002	3350	382aa	ENSP00000294816.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1247	Q6NZ39 Q8TE12	NM_001174069.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000367893.4	LMX1A-003	1342	382aa	ENSP00000356868.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1247	Q6NZ39 Q8TE12	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000489443.2	LMX1A-004	1255	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 8, Transcript length: 3,545 bps, Translation length: 382 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8TE12

CCDS

This transcript is a member of the Human CCDS set: CCDS1247

Version

ENST00000342310.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000083668 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.