Transcript: ENST00000370425.3 HFM1-002

Description

HFM1, ATP-dependent DNA helicase homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:20193]

Gene Synonyms

FLJ36760, FLJ39011, MER3, RP11-539G11.1, SEC3D1, SEC63D1, Si-11, Si-11-6, helicase

Location

Chromosome 1: 91,726,323-91,870,426 reverse strand.

About this transcript

This transcript has 39 exons, is annotated with 20 domains and features, is associated with 62183 variant alleles and maps to 979 oligo probes.

Gene

This transcript is a product of gene ENSG00000162669.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000370425.3	HFM1-002	4931	1435aa	ENSP00000359454.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS30769	A2PYH4 A6NGI5 B7ZM00 C9JQP7 D2KTB2	NM_001017975.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000294696.5	HFM1-201	4839	551aa	ENSP00000294696.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A2PYH4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000370424.3	HFM1-202	3675	1114aa	ENSP00000359453.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A6NGI5 B7ZM00 D2KTB2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000430465.1	HFM1-008	1928	625aa	ENSP00000387661.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000427444.1	HFM1-006	672	196aa	ENSP00000388900.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JQ07	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000455133.1	HFM1-007	596	138aa	ENSP00000409827.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JQP7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000448819.1	HFM1-005	540	151aa	ENSP00000397369.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JA44	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000462405.1	HFM1-009	2667	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000497520.1	HFM1-004	383	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000481900.1	HFM1-001	2020	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000488023.1	HFM1-003	1699	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 39, Coding exons: 38, Transcript length: 4,931 bps, Translation length: 1,435 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: A2PYH4

CCDS

This transcript is a member of the Human CCDS set: CCDS30769

Version

ENST00000370425.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000316716 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000370425.3 HFM1-002

Summary