Transcript: ENST00000376061.4 PDPN-006

Description

podoplanin [Source:HGNC Symbol;Acc:29602]

Gene Synonyms

AGGRUS, GP36, GP40, Gp38, HT1A-1, OTS8, PA2.26, T1A, T1A-2, T1A2, TI1A, aggrus

Location

Chromosome 1: 13,910,762-13,943,277 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 4 domains and features, is associated with 15223 variant alleles and maps to 374 oligo probes.

Gene

This transcript is a product of gene ENSG00000162493.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000294489.6	PDPN-001	3104	238aa	ENSP00000294489.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS30602	H0YA72 Q86YL7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000376057.4	PDPN-002	2801	236aa	ENSP00000365225.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41266	Q86YL7	NM_198389.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000376061.4	PDPN-006	1368	120aa	ENSP00000365229.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44060	Q86YL7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000513143.1	PDPN-007	1305	120aa	ENSP00000425304.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44060	Q86YL7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000475043.1	PDPN-005	849	118aa	ENSP00000426063.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53270	Q86YL7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000510906.1	PDPN-010	786	228aa	ENSP00000426302.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YA72	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000487038.1	PDPN-004	607	120aa	ENSP00000427537.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44060	Q86YL7	NM_001006625.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000509009.1	PDPN-009	571	157aa	ENSP00000422977.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7ETC6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000488631.1	PDPN-003	794	43aa	ENSP00000426210.1	Nonsense mediated decay		D6RH07	-	-
ENST00000506205.1	PDPN-008	476	94aa	ENSP00000421742.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 1,368 bps, Translation length: 120 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q86YL7

CCDS

This transcript is a member of the Human CCDS set: CCDS44060

Version

ENST00000376061.4

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000367733 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000376061.4 PDPN-006

Summary