Transcript: ENST00000391813.1 SHANK1-003

Description

SH3 and multiple ankyrin repeat domains 1 [Source:HGNC Symbol;Acc:15474]

Gene Synonyms

SPANK-1, SSTRIP, synamon

Location

Chromosome 19: 51,165,084-51,192,661 reverse strand.

About this transcript

This transcript has 9 exons, is annotated with 41 domains and features, is associated with 14565 variant alleles and maps to 419 oligo probes.

Gene

This transcript is a product of gene ENSG00000161681.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000293441.1	SHANK1-001	6643	2161aa	ENSP00000293441.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12799	Q9Y566	NM_016148.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000391814.1	SHANK1-002	6622	2169aa	ENSP00000375690.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H9KV90	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000359082.3	SHANK1-008	6459	2152aa	ENSP00000351984.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9Y566	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000391813.1	SHANK1-003	4785	1548aa	ENSP00000375689.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9Y566	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000468654.1	SHANK1-006	668	183aa	ENSP00000469719.1	Nonsense mediated decay		M0QYB5	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000483981.2	SHANK1-007	422	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000483128.1	SHANK1-004	780	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000461154.1	SHANK1-005	558	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 4,785 bps, Translation length: 1,548 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9Y566

Version

ENST00000391813.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000268073 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000391813.1 SHANK1-003

Summary