Transcript: ENST00000577337.1 PGAP3-010

Description

post-GPI attachment to proteins 3 [Source:HGNC Symbol;Acc:23719]

Gene Synonyms

AGLA546, CAB2, MGC9753, PER1, PERLD1, PP1498

Location

Chromosome 17: 37,829,428-37,840,951 reverse strand.

About this transcript

This transcript has 6 exons, is associated with 5183 variant alleles and maps to 162 oligo probes.

Gene

This transcript is a product of gene ENSG00000161395.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000300658.4	PGAP3-001	2737	320aa	ENSP00000300658.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32641	B4DVJ3 J3QQL0 Q96FM1	NM_033419.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000378011.4	PGAP3-002	2533	269aa	ENSP00000367250.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q96FM1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000579146.1	PGAP3-003	2220	148aa	ENSP00000463234.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QKU0 J3QQL0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000429199.2	PGAP3-004	970	299aa	ENSP00000415765.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DGK7 J3QQL0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000584856.1	PGAP3-006	538	70aa	ENSP00000463785.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QQL0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000584620.1	PGAP3-009	804	150aa	ENSP00000463011.1	Nonsense mediated decay		J3QQL0 J3QRN7	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000577337.1	PGAP3-010	587	44aa	ENSP00000464308.1	Nonsense mediated decay		J3QRN7	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000309862.6	PGAP3-005	3028	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000580898.1	PGAP3-008	556	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000582276.1	PGAP3-007	546	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 2, Transcript length: 587 bps, Translation length: 44 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000577337.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000444834 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000577337.1 PGAP3-010

Summary