Transcript: ENST00000585400.1 NPHS1-003

Description

nephrosis 1, congenital, Finnish type (nephrin) [Source:HGNC Symbol;Acc:7908]

Gene Synonyms

CNF, NPHN, nephrin

Location

About this transcript

This transcript has 3 exons, is associated with 1180 variant alleles and maps to 76 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000378910.5	NPHS1-001	4276	1241aa	ENSP00000368190.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32996	O60500	NM_004646.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000353632.6	NPHS1-002	3741	1201aa	ENSP00000343634.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		O60500	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000591817.1	NPHS1-005	581	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000585400.1	NPHS1-003	999	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000592132.1	NPHS1-004	561	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 999 bps,

Version

ENST00000585400.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000452555 (version 1)