Description
sequestosome 1 [Source:HGNC Symbol;Acc:11280]
Gene Synonyms
A170, ORCA, OSIL, PDB3, ZIP3, p60, p62, p62B
Location
Chromosome 5: 179,247,905-179,251,057 forward strand.
About this transcript
This transcript has 3 exons, is annotated with 11 domains and features, is associated with 2153 variant alleles and maps to 162 oligo probes.
Gene
This transcript is a product of gene ENSG00000161011.15 Show transcript tableHide transcript table
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000389805.4 | SQSTM1-001 | 2986 | 440aa | ENSP00000374455.4 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS34317 | C9JRJ8 E9PFW8 Q13501 | NM_003900.4 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000376929.3 | SQSTM1-201 | 2913 | 356aa | ENSP00000366128.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS47355 | C9JRJ8 E9PFW8 Q13501 | NM_001142299.1 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000360718.5 | SQSTM1-002 | 2253 | 356aa | ENSP00000353944.5 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS47355 | C9JRJ8 E9PFW8 Q13501 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000402874.3 | SQSTM1-202 | 2000 | 356aa | ENSP00000385553.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS47355 | C9JRJ8 E9PFW8 Q13501 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000510187.1 | SQSTM1-013 | 1714 | 378aa | ENSP00000424477.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9JRJ8 E7EMC7 E9PFW8 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000514093.1 | SQSTM1-015 | 842 | 167aa | ENSP00000427308.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9JRJ8 E9PFW8 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000422245.1 | SQSTM1-003 | 628 | 140aa | ENSP00000394534.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9JRJ8 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000504627.1 | SQSTM1-017 | 602 | 190aa | ENSP00000425957.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E3W990 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000508284.1 | SQSTM1-016 | 578 | 69aa | ENSP00000424195.1 | Nonsense mediated decay | D6RBF1 | - | - | |
| ENST00000453046.1 | SQSTM1-008 | 572 | 73aa | ENSP00000405061.1 | Nonsense mediated decay | C9J6J8 D6RBF1 | - | - | |
| ENST00000506690.1 | SQSTM1-010 | 2405 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000512234.1 | SQSTM1-011 | 1722 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000506042.1 | SQSTM1-014 | 921 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000481335.1 | SQSTM1-004 | 562 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000464493.1 | SQSTM1-005 | 532 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000466342.1 | SQSTM1-007 | 808 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000485412.1 | SQSTM1-006 | 656 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |