Transcript: ENST00000602563.1 RLTPR-004

Description

RGD motif, leucine rich repeats, tropomodulin domain and proline-rich containing [Source:HGNC Symbol;Acc:27089]

Gene Synonyms

CARMIL2, CARMIL2b, LRRC16C

Location

Chromosome 16: 67,678,891-67,681,515 forward strand.

About this transcript

This transcript has 10 exons, is associated with 1615 variant alleles and maps to 266 oligo probes.

Gene

This transcript is a product of gene ENSG00000159753.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000334583.6	RLTPR-001	4687	1435aa	ENSP00000334958.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45513	Q6F5E8	NM_001013838.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000545661.1	RLTPR-002	4119	1372aa	ENSP00000441481.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q6F5E8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000602563.1	RLTPR-004	1048	55aa	ENSP00000473580.1	Nonsense mediated decay		R4GNC4	-	-
ENST00000602368.1	RLTPR-010	953	124aa	ENSP00000473419.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000602321.1	RLTPR-003	4494	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000602562.1	RLTPR-007	893	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000602633.1	RLTPR-008	888	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000602705.1	RLTPR-012	638	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000602742.1	RLTPR-006	591	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000602931.1	RLTPR-009	526	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000602924.1	RLTPR-013	521	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000602467.1	RLTPR-005	485	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 10, Coding exons: 4, Transcript length: 1,048 bps, Translation length: 55 residues

Version

ENST00000602563.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000467859 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000602563.1 RLTPR-004

Summary