Transcript: ENST00000290650.4 UBR1-001

Description

ubiquitin protein ligase E3 component n-recognin 1 [Source:HGNC Symbol;Acc:16808]

Gene Synonyms

JBS

Location

Chromosome 15: 43,235,095-43,398,299 reverse strand.

About this transcript

This transcript has 47 exons, is annotated with 16 domains and features, is associated with 69058 variant alleles and maps to 1376 oligo probes.

Gene

This transcript is a product of gene ENSG00000159459.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000290650.4	UBR1-001	7761	1749aa	ENSP00000290650.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10091	Q8IWV7	NM_174916.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000382177.2	UBR1-201	7684	803aa	ENSP00000371612.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q8IWV7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000569243.1	UBR1-005	702	172aa	ENSP00000457573.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000569066.1	UBR1-003	2250	148aa	ENSP00000456327.1	Nonsense mediated decay		Q8IWV7	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000564540.1	UBR1-004	735	71aa	ENSP00000457879.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000569971.1	UBR1-010	721	72aa	ENSP00000455759.1	Nonsense mediated decay		H3BQF8	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000569337.1	UBR1-011	549	62aa	ENSP00000454962.1	Nonsense mediated decay		H3BNQ6	-	-
ENST00000563239.1	UBR1-009	545	31aa	ENSP00000456502.1	Nonsense mediated decay		H3BS20	-	-
ENST00000568782.1	UBR1-006	615	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000546274.2	UBR1-002	3332	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000566493.1	UBR1-007	598	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000562173.1	UBR1-008	597	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 47, Coding exons: 47, Transcript length: 7,761 bps, Translation length: 1,749 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8IWV7

CCDS

This transcript is a member of the Human CCDS set: CCDS10091

Version

ENST00000290650.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000253202 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Recent locations

Transcript: ENST00000290650.4 UBR1-001

Summary