Transcript: ENST00000288235.4 MYO1E-001

Description

myosin IE [Source:HGNC Symbol;Acc:7599]

Gene Synonyms

FSGS6, HuncM-IC, MGC104638, MYO1C

Location

Chromosome 15: 59,427,113-59,665,099 reverse strand.

About this transcript

This transcript has 28 exons, is annotated with 25 domains and features, is associated with 121122 variant alleles and maps to 886 oligo probes.

Gene

This transcript is a product of gene ENSG00000157483.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000288235.4	MYO1E-001	6193	1108aa	ENSP00000288235.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32254	Q12965 Q4KMR3	NM_004998.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000560749.1	MYO1E-008	952	317aa	ENSP00000454113.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000559269.1	MYO1E-005	828	276aa	ENSP00000453232.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YLJ4	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000559489.1	MYO1E-006	562	187aa	ENSP00000453178.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YLE5	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000559412.1	MYO1E-010	541	73aa	ENSP00000453936.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YNB0	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000558571.1	MYO1E-003	557	112aa	ENSP00000453811.1	Nonsense mediated decay		H0YN00	-	-
ENST00000558814.1	MYO1E-004	768	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000558182.1	MYO1E-009	544	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000558646.1	MYO1E-002	578	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000560642.1	MYO1E-007	559	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 28, Coding exons: 28, Transcript length: 6,193 bps, Translation length: 1,108 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q12965

CCDS

This transcript is a member of the Human CCDS set: CCDS32254

Version

ENST00000288235.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000416024 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000288235.4 MYO1E-001

Summary