Transcript: ENST00000490283.1 SEC13-017

Description

SEC13 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:10697]

Gene Synonyms

D3S1231E, SEC13L1, SEC13R, npp-20

Location

Chromosome 3: 10,345,795-10,347,394 reverse strand.

About this transcript

This transcript has 2 exons, is associated with 567 variant alleles and maps to 222 oligo probes.

Gene

This transcript is a product of gene ENSG00000157020.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000397117.1	SEC13-005	1603	284aa	ENSP00000380306.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A8MXL6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000383801.2	SEC13-003	1479	368aa	ENSP00000373312.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS63540	A4UCS7 B4DXJ1 C9JIB6 E7ERC8	NM_001136026.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000397109.3	SEC13-004	1467	308aa	ENSP00000380298.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46751	P55735	NM_001136232.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000350697.3	SEC13-001	1425	322aa	ENSP00000312122.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2599	A4UCS7 P55735	NM_183352.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000337354.4	SEC13-002	1363	325aa	ENSP00000336566.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A4UCS7 E7ERC8 P55735	NM_030673.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000431352.1	SEC13-012	832	86aa	ENSP00000401368.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7ERC8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000445064.1	SEC13-006	669	27aa	ENSP00000398623.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JBJ5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000432213.1	SEC13-019	594	24aa	ENSP00000404141.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JIB6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000428626.1	SEC13-007	567	28aa	ENSP00000400260.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J0S2 C9JBJ5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000492602.1	SEC13-013	393	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000479868.2	SEC13-015	2374	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000477547.2	SEC13-014	1313	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000397105.3	SEC13-011	883	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000482647.1	SEC13-016	782	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000490283.1	SEC13-017	740	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000476597.1	SEC13-018	614	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000397101.1	SEC13-008	592	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000397102.1	SEC13-010	582	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000397099.1	SEC13-009	555	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 740 bps,

Version

ENST00000490283.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000339652 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000490283.1 SEC13-017

Summary