Transcript: ENST00000286827.3 TIAM1-001

Description

T-cell lymphoma invasion and metastasis 1 [Source:HGNC Symbol;Acc:11805]

Location

About this transcript

This transcript has 29 exons, is annotated with 34 domains and features, is associated with 197541 variant alleles and maps to 992 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000286827.3	TIAM1-001	7200	1591aa	ENSP00000286827.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13609	C9JMB5 Q13009	NM_003253.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000541036.1	TIAM1-201	4654	1531aa	ENSP00000441570.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JMB5 F5GZ53	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000455508.1	TIAM1-003	1187	225aa	ENSP00000388217.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JMB5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000423206.1	TIAM1-005	523	132aa	ENSP00000393384.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000469412.1	TIAM1-002	2313	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000491927.1	TIAM1-004	938	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 29, Coding exons: 25, Transcript length: 7,200 bps, Translation length: 1,591 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q13009

CCDS

This transcript is a member of the Human CCDS set: CCDS13609

Version

ENST00000286827.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000192552 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.