Transcript: ENST00000324849.4 VPS37A-001

Description

vacuolar protein sorting 37 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:24928]

Gene Synonyms

FLJ32642, HCRP1, PQBP2, SPG53

Location

Chromosome 8: 17,104,080-17,155,533 forward strand.

About this transcript

This transcript has 12 exons, is annotated with 12 domains and features, is associated with 29788 variant alleles and maps to 796 oligo probes.

Gene

This transcript is a product of gene ENSG00000155975.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000324849.4	VPS37A-001	4906	397aa	ENSP00000318629.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6001	B3KW95 H0YBN0 Q8NEZ2	NM_152415.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000521829.1	VPS37A-003	1307	372aa	ENSP00000429680.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47811	B3KW95 H0YBN0 Q8NEZ2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000324815.3	VPS37A-201	911	185aa	ENSP00000318173.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q8NEZ2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000521976.1	VPS37A-008	697	170aa	ENSP00000429858.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YBN0	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000518038.1	VPS37A-005	655	116aa	ENSP00000430456.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RJX6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000521005.1	VPS37A-006	479	76aa	ENSP00000430933.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RHB8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000425020.2	VPS37A-002	4051	185aa	ENSP00000412824.2	Nonsense mediated decay		Q8NEZ2	-	-
ENST00000520140.1	VPS37A-004	2102	317aa	ENSP00000428823.1	Nonsense mediated decay		E5RG91	-	-
ENST00000519381.1	VPS37A-007	575	53aa	ENSP00000429227.1	Nonsense mediated decay		E5RJ10	-	-
ENST00000521162.1	VPS37A-009	818	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000520997.1	VPS37A-010	627	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000519515.1	VPS37A-011	266	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 12, Coding exons: 11, Transcript length: 4,906 bps, Translation length: 397 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8NEZ2

CCDS

This transcript is a member of the Human CCDS set: CCDS6001

Version

ENST00000324849.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000253301 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000324849.4 VPS37A-001

Summary