Transcript: ENST00000284136.6 SEMA3D-001

Description

sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D [Source:HGNC Symbol;Acc:10726]

Gene Synonyms

Sema-Z2, coll-2

Location

About this transcript

This transcript has 17 exons, is annotated with 17 domains and features, is associated with 53446 variant alleles and maps to 625 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000284136.6	SEMA3D-001	6265	777aa	ENSP00000284136.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34676	O95025	NM_152754.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000444867.1	SEMA3D-002	1605	294aa	ENSP00000401366.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JYT6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000484038.1	SEMA3D-004	1503	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000463315.1	SEMA3D-003	1257	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 17, Coding exons: 17, Transcript length: 6,265 bps, Translation length: 777 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O95025

CCDS

This transcript is a member of the Human CCDS set: CCDS34676

Version

ENST00000284136.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000336084 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.