Transcript: ENST00000489791.1 IGSF10-004

Description

immunoglobulin superfamily, member 10 [Source:HGNC Symbol;Acc:26384]

Gene Synonyms

CMF608, FLJ25972

Location

Chromosome 3: 151,143,172-151,160,938 reverse strand.

About this transcript

This transcript has 2 exons, is annotated with 6 domains and features, is associated with 9437 variant alleles and maps to 45 oligo probes.

Gene

This transcript is a product of gene ENSG00000152580.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000282466.3	IGSF10-001	11067	2623aa	ENSP00000282466.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3160	Q6WRI0	NM_178822.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000489791.1	IGSF10-004	524	86aa	ENSP00000417627.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7C4M2	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000495443.1	IGSF10-002	2254	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000493841.1	IGSF10-003	2128	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000497472.1	IGSF10-005	221	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 2, Transcript length: 524 bps, Translation length: 86 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000489791.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Stop codons

This transcript has a variant, rs6440742, that causes a stop codon to be gained in at least 10% of HapMap or 1000 Genome population(s) CSHL-HAPMAP:HAPMAP-TSI, CSHL-HAPMAP:HapMap-HCB, CSHL-HAPMAP:HAPMAP-GIH, CSHL-HAPMAP:HapMap-CEU, CSHL-HAPMAP:HAPMAP-ASW, CSHL-HAPMAP:HapMap-JPT, CSHL-HAPMAP:HAPMAP-CHB, CSHL-HAPMAP:HAPMAP-CHD, CSHL-HAPMAP:HAPMAP-LWK, CSHL-HAPMAP:HAPMAP-MEX, CSHL-HAPMAP:HapMap-YRI, CSHL-HAPMAP:HAPMAP-MKK.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000357785 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000489791.1 IGSF10-004

Summary