Transcript: ENST00000380958.3 PAN3-002

Description

PAN3 poly(A) specific ribonuclease subunit homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:29991]

Location

About this transcript

This transcript has 19 exons, is annotated with 14 domains and features, is associated with 68890 variant alleles and maps to 498 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000399613.1	PAN3-001	4940	687aa	ENSP00000382522.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q58A45 Q6ZMN5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000282391.5	PAN3-201	4544	575aa	ENSP00000282391.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q58A45 Q6ZMN5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000380958.3	PAN3-002	2833	887aa	ENSP00000370345.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9329	Q58A45 Q6ZMN5	NM_175854.7	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000483842.1	PAN3-003	729	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000503791.1	PAN3-004	2443	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 19, Coding exons: 19, Transcript length: 2,833 bps, Translation length: 887 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q58A45

CCDS

This transcript is a member of the Human CCDS set: CCDS9329

Version

ENST00000380958.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000044318 (version 4)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.