Transcript: ENST00000543886.1 PTPRO-003

Description

protein tyrosine phosphatase, receptor type, O [Source:HGNC Symbol;Acc:9678]

Gene Synonyms

GLEPP1, NPHS6, PTP-OC, PTP-U2, PTP-oc, PTPROT, PTPU2, R-PTP-O

Location

Chromosome 12: 15,475,477-15,669,997 forward strand.

About this transcript

This transcript has 9 exons, is annotated with 9 domains and features, is associated with 86331 variant alleles and maps to 245 oligo probes.

Gene

This transcript is a product of gene ENSG00000151490.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000281171.4	PTPRO-001	5301	1216aa	ENSP00000281171.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8675	B4DS16 Q16827	NM_030667.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000348962.2	PTPRO-002	5061	1188aa	ENSP00000343434.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8674	B4DS16 Q16827	NM_002848.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000445537.2	PTPRO-006	4062	405aa	ENSP00000393449.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44837	B4DS16 Q16827	NM_030671.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000544244.1	PTPRO-007	3978	377aa	ENSP00000439234.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53754	B4DS16 Q16827	NM_030670.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000442921.2	PTPRO-004	3030	405aa	ENSP00000404188.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44837	B4DS16 Q16827	NM_030669.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000542557.1	PTPRO-005	2946	377aa	ENSP00000437571.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53754	B4DS16 Q16827	NM_030668.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000543886.1	PTPRO-003	2070	597aa	ENSP00000444173.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q8IYG3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000535322.1	PTPRO-012	472	116aa	ENSP00000446201.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YH60	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000535311.1	PTPRO-011	533	88aa	ENSP00000445621.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000544706.1	PTPRO-010	905	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000545023.1	PTPRO-008	512	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000538907.1	PTPRO-009	580	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 2,070 bps, Translation length: 597 residues

Version

ENST00000543886.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000401080 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000543886.1 PTPRO-003

Summary