Transcript: ENST00000444595.2 CACNA2D4-003

Description

calcium channel, voltage-dependent, alpha 2/delta subunit 4 [Source:HGNC Symbol;Acc:20202]

Gene Synonyms

RCD4

Location

Chromosome 12: 1,901,939-2,027,803 reverse strand.

About this transcript

This transcript has 37 exons, is annotated with 14 domains and features, is associated with 57877 variant alleles and maps to 903 oligo probes.

Gene

This transcript is a product of gene ENSG00000151062.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000382722.5	CACNA2D4-001	5475	1137aa	ENSP00000372169.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44785	Q7Z3S7	NM_172364.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000587995.1	CACNA2D4-022	3883	1112aa	ENSP00000465372.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EJY1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000586184.1	CACNA2D4-025	3499	1154aa	ENSP00000465060.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q7Z3S7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000588077.1	CACNA2D4-024	3311	1073aa	ENSP00000468530.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q7Z3S7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000585708.1	CACNA2D4-026	3273	1090aa	ENSP00000467697.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q7Z3S7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000585732.1	CACNA2D4-023	2566	780aa	ENSP00000468080.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7ER25	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000538450.1	CACNA2D4-006	1498	267aa	ENSP00000446341.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DVU4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000538027.2	CACNA2D4-018	952	282aa	ENSP00000443038.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000536846.2	CACNA2D4-019	895	284aa	ENSP00000468167.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000444595.2	CACNA2D4-003	4450	601aa	ENSP00000403371.2	Nonsense mediated decay		E7EUE0	-	-
ENST00000537784.1	CACNA2D4-005	2876	192aa	ENSP00000440231.2	Nonsense mediated decay		K7EIY9	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000545595.2	CACNA2D4-004	1615	41aa	ENSP00000442329.2	Nonsense mediated decay		Q7Z3S7	-	-
ENST00000585385.1	CACNA2D4-009	976	56aa	ENSP00000467333.1	Nonsense mediated decay		K7EIY9	-	-
ENST00000537923.1	CACNA2D4-010	556	56aa	ENSP00000464949.1	Nonsense mediated decay		K7EIY9	-	-
ENST00000539048.2	CACNA2D4-016	499	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000280663.8	CACNA2D4-002	5936	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000589502.1	CACNA2D4-017	680	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000541444.1	CACNA2D4-015	676	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000540728.2	CACNA2D4-012	596	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000541616.1	CACNA2D4-007	576	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000543405.1	CACNA2D4-014	575	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000542340.1	CACNA2D4-011	558	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000536818.2	CACNA2D4-008	552	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000588896.1	CACNA2D4-020	550	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000541331.1	CACNA2D4-013	498	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000590880.1	CACNA2D4-021	404	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 37, Coding exons: 17, Transcript length: 4,450 bps, Translation length: 601 residues

Version

ENST00000444595.2

Type

Nonsense mediated decay

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000398228 (version 2)

Favourite species

All species

Recent locations

Transcript: ENST00000444595.2 CACNA2D4-003

Summary