Transcript: ENST00000577390.1 CDH8-001

Description

cadherin 8, type 2 [Source:HGNC Symbol;Acc:1767]

Gene Synonyms

Nbla04261

Location

Chromosome 16: 61,681,146-62,070,739 reverse strand.

About this transcript

This transcript has 12 exons, is annotated with 45 domains and features, is associated with 172277 variant alleles and maps to 553 oligo probes.

Gene

This transcript is a product of gene ENSG00000150394.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000577390.1	CDH8-001	9721	799aa	ENSP00000462701.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10802	J3KT81 J3KTG8 P55286	NM_001796.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000577730.1	CDH8-012	8009	744aa	ENSP00000462018.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KRI5 J3KT81 J3KTG8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000584337.1	CDH8-003	3986	532aa	ENSP00000463511.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KT81 J3KTG8 J3QLE6 Q3LID3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000299345.6	CDH8-013	3728	745aa	ENSP00000299345.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KT81 J3KTG8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000583382.1	CDH8-011	1528	425aa	ENSP00000462976.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KT81 J3KTG8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000584506.1	CDH8-002	559	81aa	ENSP00000462847.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KT81	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000585315.1	CDH8-014	9076	476aa	ENSP00000463266.1	Nonsense mediated decay		J3KT81 J3KTG8 J3QKW5	-	-
ENST00000580044.1	CDH8-008	778	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000577228.1	CDH8-004	539	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000583483.1	CDH8-010	380	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000582980.1	CDH8-006	376	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000577536.1	CDH8-009	324	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000582242.1	CDH8-007	572	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000584966.1	CDH8-005	572	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 12, Coding exons: 11, Transcript length: 9,721 bps, Translation length: 799 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P55286

CCDS

This transcript is a member of the Human CCDS set: CCDS10802

Version

ENST00000577390.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000268754 (version 3)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000577390.1 CDH8-001

Summary