Transcript: ENST00000537275.1 HMGA2-004

Description

high mobility group AT-hook 2 [Source:HGNC Symbol;Acc:5009]

Gene Synonyms

BABL, HMGI-C, HMGIC, LIPO, STQTL9

Location

Chromosome 12: 66,218,240-66,236,697 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 18 domains and features, is associated with 8276 variant alleles and maps to 239 oligo probes.

Gene

This transcript is a product of gene ENSG00000149948.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000541363.1	HMGA2-011	8094	99aa	ENSP00000439317.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H2U8 Q8IZX8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000403681.2	HMGA2-001	4473	109aa	ENSP00000384026.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44936	B2KX87 P52926 Q8IZX8	NM_003483.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000536545.1	HMGA2-003	1788	147aa	ENSP00000437621.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H6H0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000354636.3	HMGA2-008	1529	106aa	ENSP00000346658.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31854	P52926	NM_003484.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000425208.2	HMGA2-006	1444	92aa	ENSP00000407306.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YFY4 P52926	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000393578.3	HMGA2-005	1398	90aa	ENSP00000377206.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		P52926	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000393577.3	HMGA2-013	611	118aa	ENSP00000377205.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H2A4 Q8IZX8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000537429.1	HMGA2-007	1527	86aa	ENSP00000443372.1	Nonsense mediated decay		P52926	-	-
ENST00000537275.1	HMGA2-004	1508	103aa	ENSP00000437747.1	Nonsense mediated decay		P52926	-	-
ENST00000539662.1	HMGA2-012	485	55aa	ENSP00000440919.1	Nonsense mediated decay		H0YFY4	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000545998.1	HMGA2-009	1584	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 1,508 bps, Translation length: 103 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P52926

Version

ENST00000537275.1

Type

Nonsense mediated decay

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000401655 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000537275.1 HMGA2-004

Summary