Transcript: ENST00000527129.1 CAPN5-005

Description

calpain 5 [Source:HGNC Symbol;Acc:1482]

Gene Synonyms

HTRA3, NCL3, nCL-3

Location

Chromosome 11: 76,830,453-76,835,541 forward strand.

About this transcript

This transcript has 4 exons, is associated with 2282 variant alleles and maps to 292 oligo probes.

Gene

This transcript is a product of gene ENSG00000149260.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000278559.3	CAPN5-001	4397	640aa	ENSP00000278559.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8248	E9PS73 O15484	NM_004055.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000456580.2	CAPN5-004	2805	680aa	ENSP00000409996.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7EV01	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000529629.1	CAPN5-003	2333	640aa	ENSP00000432332.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8248	E9PS73 O15484	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000527066.1	CAPN5-007	597	97aa	ENSP00000435894.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PS73	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000531028.1	CAPN5-006	534	52aa	ENSP00000467244.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EP62	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000527129.1	CAPN5-005	2564	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000533889.1	CAPN5-009	542	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 2,564 bps,

Version

ENST00000527129.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000382569 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000527129.1 CAPN5-005

Summary